KIAA1217: A novel candidate gene associated with isolated and syndromic vertebral malformations.

TitleKIAA1217: A novel candidate gene associated with isolated and syndromic vertebral malformations.
Publication TypeJournal Article
Year of Publication2020
AuthorsDhaheri, NAl, Wu, N, Zhao, S, Wu, Z, Blank, RD, Zhang, J, Raggio, C, Halanski, M, Shen, J, Noonan, K, Qiu, G, Nemeth, B, Sund, S, Dunwoodie, SL, Chapman, G, Glurich, I, Steiner, RD, Wohler, E, Martin, R, Sobreira, NLygia, Giampietro, PF
JournalAm J Med Genet A
Volume182
Issue7
Pagination1664-1672
Date Published2020 Jul
ISSN1552-4833
Abstract

Vertebral malformations (VMs) are caused by alterations in somitogenesis and may occur in association with other congenital anomalies. The genetic etiology of most VMs remains unknown and their identification may facilitate the development of novel therapeutic and prevention strategies. Exome sequencing was performed on both the discovery cohort of nine unrelated probands from the USA with VMs and the replication cohort from China (Deciphering Disorders Involving Scoliosis & COmorbidities study). The discovery cohort was analyzed using the PhenoDB analysis tool. Heterozygous and homozygous, rare and functional variants were selected and evaluated for their ClinVar, HGMD, OMIM, GWAS, mouse model phenotypes, and other annotations to identify the best candidates. Genes with candidate variants in three or more probands were selected. The replication cohort was analyzed by another in-house developed pipeline. We identified rare heterozygous variants in KIAA1217 in four out of nine probands in the discovery cohort and in five out of 35 probands in the replication cohort. Collectively, we identified 11 KIAA1217 rare variants in 10 probands, three of which have not been described in gnomAD and one of which is a nonsense variant. We propose that genetic variations of KIAA1217 may contribute to the etiology of VMs.

DOI10.1002/ajmg.a.61607
Alternate JournalAm. J. Med. Genet. A
PubMed ID32369272
Grant ListNHGRI UM1 HG006542 / HG / NHGRI NIH HHS / United States
81772301 / / National Natural Science Foundation of China /
UM1 HG006542 / HG / NHGRI NIH HHS / United States
81822030 / / National Natural Science Foundation of China /
2016-I2M-3-003 / / The CAMS Initiative Fund for Medical Sciences /
635500 / / NHMRC /
2016-I2M-2-006 / / The CAMS Initiative Fund for Medical Sciences /
ID1042002 / / NHMRC /
81772299 / / National Natural Science Foundation of China /
2018YFC0910500 / / National Key and Development Program of China /
2017-I2M-2-001 / / The CAMS Initiative Fund for Medical Sciences /
ID514900 / / NHMRC /
R03HD099516 / / Eunice Kennedy Shriver National Institute of Child Health and Human Development /